mapping file is csv

default sample naming rule: first before _ is sample

hybrid

reprganized nextflow folder

ignore ,gitignore folder

ignotr nextflow logs

cleanup

corrected

Kimi export sessions invisible

Removing excessive files

correct re-running

debugging and making pipeline closer to original

bwa folder to never run bwa index again

continuation

resources

localizing

local configuration files

testing folder

sarek implementation fastq->bam

Sample name to qc report

Sample name rollback

inputFolder in report also

genebe multiple retries

sample number in report

rollback to starting N by default