old awk bug again

old awk bug with not recognizing **

singleEndCorrected

main_single_end

Merge branch 'master' of https://gitverse.ru/sc/d_bug/BashGATK

example conf changed

minReadLen introduced

renamed conda envs

renamed envs

variable conda env names

mutect2 SE version

mutect2 for SE reads

mutect2 for SE reads

Merge branch 'master' of https://gitverse.ru/sc/d_bug/BashGATK

any fields number target files can be used now

closer to parseq

check mask script

mask check script

typo

typo

Merge branch 'master' of https://gitverse.ru/d_bug/BashGATK

More comprehencive depth

Corrected single end

SE sequencing