duplication qc

genebe time management

per gene depth normalized on target regions

Do not rename if already renamed

os imported

added qcreport, reordered callers

Creating excel

report_qc

new identifiers management

genebe reruns analysis automatically several times

mask creation not ignoring startin with Ns

Pausing after each 50th request

mutect2 hotspots calling

strange commit bug

promoter AI placeholder

Delly for long indels

backup genebe

iterative spliceAI

freebayes genotype correction

parallel in conf

graphtyper

mutect2 and hapcal for amplicon

SE deduplication

Merge branch 'master' of https://gitverse.ru/d_bug/BashGATK

finally remove conflist

SNV calling example

getting somatic variants in

freebayes

update: README.md